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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32445173_32445433_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32445173 - 32445433
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCAA
5'SS Class:
major
3'SS Sequence:
CTGTTCACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTCTCTGAGT
Flanking Amino Acid:
KGGVYKKCSVQHSLCGKVQC
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.2
38.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
76.8
0.6
0.9
70.6
34.8
Minor 5ss
35.7
-1.6
2.9
46.8
42.6
Minor BPS
51.9
0.14
2
75.39
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015412
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040306
32433668 - 32448766
15099
ENSAPLT00000016125
32433668 - 32449054
15387