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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32448637_32448975_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32448637 - 32448975
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAGA
5'SS Class:
major
3'SS Sequence:
TTCCACACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
ATTTCACTAAAT
Flanking Amino Acid:
FFTISHFPGSRQPVQTRIPP
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
71.8
39.4
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
74.7
0.56
0.9
70.7
34.4
Minor 5ss
37.5
-1.4
2.4
43.5
43.5
Minor BPS
57.2
0.3
2
82.41
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015412
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016125
32433668 - 32449054
15387