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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32451136_32451514_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32451136 - 32451514
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TTTTCTCTATTT
Flanking Amino Acid:
EYDAVLMKDCYAQIINLLAT
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
76.9
32.3
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
44.7
-0.6
2.8
61.4
37.9
Minor BPS
60.6
0.41
1.9
84.33
36.8

Associated Gene:

Gene:
PSTK
Ensembl Gene ID:
ENSAPLG00000015335
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015977
32450357 - 32453018
2662