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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32451591_32452071_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
32451591 - 32452071
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAGTA
5'SS Class:
major
3'SS Sequence:
CCATTGTGGCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTGTTCTCACTT
Flanking Amino Acid:
KQNEENTEQKEADRVACAAS
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
68.5
36.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
55.3
0.12
1.1
49.7
43.7
Minor 5ss
32
-2.1
3.8
46.4
48.9
Minor BPS
49.7
0.06
1.8
68.17
43.3

Associated Gene:

Gene:
PSTK
Ensembl Gene ID:
ENSAPLG00000015335
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015977
32450357 - 32453018
2662