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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32452166_32452377_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32452166 - 32452377
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGGCTTTCATT
Flanking Amino Acid:
VISQTMKEAKDKNVLPSEMK
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.7
0.58
1
79.6
32.4
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
56
0.27
1.9
74.76
43.2

Associated Gene:

Gene:
PSTK
Ensembl Gene ID:
ENSAPLG00000015335
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015977
32450357 - 32453018
2662