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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32457855_32458040_R

Intron Information:

Intron Rank:
5
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
32457855 - 32458040
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
ACA|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ATATTTTTCATAC|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
CQHCDMYFADIAEGKLARSH
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
31
-1.1
3.3
47.3
43.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
43
-0.4
3.2
65.4
40.4
Minor 5ss
98
1.6
0.7
93.5
17.1
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
IKZF5
Ensembl Gene ID:
ENSAPLG00000015301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036367
32457578 - 32464620
7043
ENSAPLT00000015950
32457578 - 32464620
7043