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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32458851_32459857_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32458851 - 32459857
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTAATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTATTTTAATT
Flanking Amino Acid:
TWIAWTMKAQSEKPHRCHLC
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
67.4
33.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.6
0.8
0.8
77.2
41.4
Minor 5ss
27.8
-2.5
3
27.4
37.6
Minor BPS
69.9
0.7
1.2
79.53
37.3

Associated Gene:

Gene:
IKZF5
Ensembl Gene ID:
ENSAPLG00000015301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036367
32457578 - 32464620
7043