About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32459960_32462858_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32459960 - 32462858
Intron Length:
2899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCACTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TTTGTTTCCACT
Flanking Amino Acid:
RLIEHIRIHTGQGDPRPECG
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.7
35.4
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
67.3
0.39
1.1
69.8
35.6
Minor 5ss
47.1
-0.3
2.6
65.5
45.8
Minor BPS
48.8
-0
2
74.97
42.5

Associated Gene:

Gene:
IKZF5
Ensembl Gene ID:
ENSAPLG00000015301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036367
32457578 - 32464620
7043