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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32463887_32464554_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
32463887 - 32464554
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGCAAA
5'SS Class:
major
3'SS Sequence:
TTCTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTCCTTTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
65
42.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
90.4
0.91
0.6
88.7
20.7
Minor 5ss
36.9
-1.5
3.1
39.3
46.4
Minor BPS
76.9
0.93
1.5
90.44
33

Associated Gene:

Gene:
IKZF5
Ensembl Gene ID:
ENSAPLG00000015301
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015950
32457578 - 32464620
7043
ENSAPLT00000036367
32457578 - 32464620
7043