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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32465849_32469011_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32465849 - 32469011
Intron Length:
3163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGCCC
5'SS Class:
major
3'SS Sequence:
TTGTTTCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTTCTGTATTT
Flanking Amino Acid:
GGWLRSGATKLKRNIPAYLA
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
59.9
39.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.1
0.63
0.9
74.4
35.3
Minor 5ss
25.9
-2.8
3.2
33.5
41.9
Minor BPS
50.5
0.1
2.2
76.04
41.4

Associated Gene:

Gene:
ACADSB
Ensembl Gene ID:
ENSAPLG00000015129
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025347
32465804 - 32480075
14272