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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32469175_32470036_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32469175 - 32470036
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACCTATT
5'SS Class:
major
3'SS Sequence:
CTTTTCATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATT
Flanking Amino Acid:
TEEETMLKNMVKKFAQERVA
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.3
72.9
44.2
Major BPS
100
1.24
0.5
100
0
Major PPT
86.7
0.82
0.7
80.9
29.6
Minor 5ss
45.7
-0.5
2.9
59.9
44.8
Minor BPS
59.7
0.39
1.7
80.3
36.2

Associated Gene:

Gene:
ACADSB
Ensembl Gene ID:
ENSAPLG00000015129
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025347
32465804 - 32480075
14272
ENSAPLT00000015787
32468964 - 32480075
11112