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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3246936_3247712_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3246936 - 3247712
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TGTCACTGAACC
Flanking Amino Acid:
KADKVVMFQRKYYKPSVVLL
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.3
27.7
Major BPS
62
0.3
1
53
34.1
Major PPT
84.7
0.78
0.7
76.3
32.3
Minor 5ss
39.1
-1.2
2.9
50.9
39.6
Minor BPS
59.7
0.28
1.7
71.44
38.6

Associated Gene:

Gene:
SCD
Ensembl Gene ID:
ENSAPLG00000015665
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016337
3233013 - 3250354
17342