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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32471142_32471586_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32471142 - 32471586
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTCAT
5'SS Class:
major
3'SS Sequence:
CTTTAATTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCCCCTTTAATT
Flanking Amino Acid:
TYLPKVSKDTIGSFCLSEAG
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
68.1
38.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
73.6
0.53
1
69
40.7
Minor 5ss
32.6
-2
3
46.8
42.6
Minor BPS
69.9
0.7
1.2
76.64
40.8

Associated Gene:

Gene:
ACADSB
Ensembl Gene ID:
ENSAPLG00000015129
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025347
32465804 - 32480075
14272
ENSAPLT00000015787
32468964 - 32480075
11112