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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3247946_3249154_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3247946 - 3249154
Intron Length:
1209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
ACCCCTGCAACA
Flanking Amino Acid:
ENPLVSLGALGEGFHNYHHT
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
77.9
33
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
39.4
-1.2
2.9
50.7
45.6
Minor BPS
43.2
-0.5
2.1
50.85
41

Associated Gene:

Gene:
SCD
Ensembl Gene ID:
ENSAPLG00000015665
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016337
3233013 - 3250354
17342