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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32526336_32527678_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32526336 - 32527678
Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACTAT
U12 Branch Point Sequence:
ATTTTCTTACAG
Flanking Amino Acid:
LKMHDLNTDQENLVGGHDAP
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
62.1
0.3
1.4
61.1
45
Major PPT
89.8
0.9
0.7
84.5
30.1
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
58.7
0.13
1.8
66.56
41.1

Associated Gene:

Gene:
BUB3
Ensembl Gene ID:
ENSAPLG00000014959
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015610
32525234 - 32538020
12787