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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32527831_32530908_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32527831 - 32530908
Intron Length:
3078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTGAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTCTTCTGAAAA
Flanking Amino Acid:
NAGTFSQPEKVYTLSVSGDR
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.5
35.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
64.2
0.32
1.1
67.7
36.8
Minor 5ss
55
0.17
2.5
74.6
41.7
Minor BPS
63.6
0.42
1.5
73.17
38.4

Associated Gene:

Gene:
BUB3
Ensembl Gene ID:
ENSAPLG00000014959
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015610
32525234 - 32538020
12787