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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32535277_32535632_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32535277 - 32535632
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTAG
5'SS Class:
major
3'SS Sequence:
TGTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATAATG
Flanking Amino Acid:
FHNVHNTFATGGSDGFVNIW
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
59.9
41.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
34
-1.8
3.6
45.4
49.7
Minor BPS
63.2
0.28
1.6
71.4
36

Associated Gene:

Gene:
BUB3
Ensembl Gene ID:
ENSAPLG00000014959
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015610
32525234 - 32538020
12787