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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32774502_32780081_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32774502 - 32780081
Intron Length:
5580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGAATGTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTGTGTTGAATG
Flanking Amino Acid:
TLVLLVDIHPSVRERCLEEQ
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
84.6
0.86
1
74
41.2
Major PPT
67.9
0.4
1
60.8
44.4
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
49.7
-0.1
1.9
59.51
43.1

Associated Gene:

Gene:
GPR26
Ensembl Gene ID:
ENSAPLG00000014879
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015499
32773834 - 32786902
13069