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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32780196_32786670_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32780196 - 32786670
Intron Length:
6475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTCTTTCAACC
Flanking Amino Acid:
ILCFAPYVITRLVELSSVVP
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.8
76.2
39.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.3
0.61
0.8
71.6
33
Minor 5ss
32.1
-2
3.1
40.6
45.6
Minor BPS
54
0.11
1.5
61.83
37.6

Associated Gene:

Gene:
GPR26
Ensembl Gene ID:
ENSAPLG00000014879
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015499
32773834 - 32786902
13069