Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32815522_32818195_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

32815522 - 32818195

Intron Length:

2674

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTCAACACA

5'SS Class:

weak_major

3'SS Sequence:

CCAGAGTAGGAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTGGAT

U12 Branch Point Sequence:

TGCCCCGTTACC

Flanking Amino Acid:

NKIKNSFKIKTDLRKGPLNT

Intron Amino Acid Position:

182

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.8

0.14

1.3

58.6

40.5

Major BPS

71.4

0.53

1.4

71.4

45.1

Major PPT

44.9

-0.2

1.2

37.1

38.5

Minor 5ss

36.1

-1.6

2.8

41.7

38.7

Minor BPS

46.9

-0.2

2.3

61.09

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029693

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040508

32815400 - 32823129

7730