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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32819434_32822864_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32819434 - 32822864
Intron Length:
3431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
TCCTCTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCC
Flanking Amino Acid:
NGASWHTVAGSINDFSYLHT
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.1
34.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.3
0.57
0.9
71.7
32.9
Minor 5ss
37.6
-1.4
3.6
51.8
39.7
Minor BPS
71.4
0.65
1.5
81.41
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029693
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040508
32815400 - 32823129
7730