About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32824252_32825095_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
32824252 - 32825095

Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GCG|GTAATATGG

5'SS Class:
major

3'SS Sequence:
TTTTCATTCTAAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTCAT

U12 Branch Point Sequence:
TTTTTTTTCATT

Flanking Amino Acid:
PDGYDKAYKAGSELGGWSLG

Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69.6
0.46
1.1
56.6
43.3

Major BPS
100
1.24
0.5
100
0

Major PPT
75.2
0.57
1
79.9
31.3

Minor 5ss
37.9
-1.4
3.1
48.4
47.2

Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

32823976 - 32858391
34416