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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32825293_32826664_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32825293 - 32826664
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTAGGATT
5'SS Class:
major
3'SS Sequence:
ATGTGTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ATGTGTTTGACA
Flanking Amino Acid:
ISDNPGEHEVGEPEFRYIAG
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.2
76.4
38.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
69.6
0.44
1.1
65
45.2
Minor 5ss
34.7
-1.7
3.2
47.5
42.2
Minor BPS
57.6
0.23
1.8
67.9
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014617
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015269
32823976 - 32858391
34416