About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3284433_3285271_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3284433 - 3285271
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCCTCCTGACCT
Flanking Amino Acid:
VNNFLMTGPKAYLIYSSSVA
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
63.7
0.31
0.9
54.4
36.6
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
53.3
0.18
1.9
68.08
48.5

Associated Gene:

Gene:
WNT8B
Ensembl Gene ID:
ENSAPLG00000015543
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016206
3284334 - 3289155
4822