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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3286551_3288023_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3286551 - 3288023
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CACATCTCATCT
Flanking Amino Acid:
GCDDSRNGQLGGQGWLWGGC
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
72.7
38.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
79
0.65
0.7
72.6
32.1
Minor 5ss
33
-1.9
3.1
41.9
44.5
Minor BPS
45.3
-0.2
1.8
57.49
45.1

Associated Gene:

Gene:
WNT8B
Ensembl Gene ID:
ENSAPLG00000015543
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016206
3284334 - 3289155
4822