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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3288167_3288597_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3288167 - 3288597
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCATCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTGCATC
Flanking Amino Acid:
NLHNNEAGRKAVKGTMKRTC
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
79.1
0.66
0.8
72.5
31.8
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
63.7
0.41
1.9
79.19
36.3

Associated Gene:

Gene:
WNT8B
Ensembl Gene ID:
ENSAPLG00000015543
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016206
3284334 - 3289155
4822