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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32908780_32909727_F

Intron Information:

Intron Rank:
137606
Intron Class:
major
Intron Phase:
Intron Coordinates:
32908780 - 32909727
Intron Length:
948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CTCTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CAAACTTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85.8
0.81
0.8
83.6
31.4
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
61.4
0.36
1.3
61.94
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024107
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042184
32907369 - 32910197
2829