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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_32965061_32965296_R

Intron Information:

Intron Rank:
133281
Intron Class:
major
Intron Phase:
Intron Coordinates:
32965061 - 32965296
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGTGC
5'SS Class:
major
3'SS Sequence:
TGCTGCTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
CCAACGCCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
63.3
37.9
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
69.8
0.45
0.9
61.5
40
Minor 5ss
31
-2.2
3.3
41.1
45.6
Minor BPS
39.2
-0.7
2.4
54.5
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018943
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025410
32963968 - 32971349
7382