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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3298690_3299927_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3298690 - 3299927
Intron Length:
1238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATC
Flanking Amino Acid:
SVRGGLQKKKLPEKFTPPAP
Intron Amino Acid Position:
1034

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80
0.68
1
76.5
37.7
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
76.7
0.82
1
78.69
30.3

Associated Gene:

Gene:
SEC31B
Ensembl Gene ID:
ENSAPLG00000015227
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042973
3295669 - 3320638
24970
ENSAPLT00000015921
3294451 - 3320638
26188