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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3299981_3301839_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3299981 - 3301839
Intron Length:
1859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTACAC
5'SS Class:
major
3'SS Sequence:
TGTCTCTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TGTCTCTTGACA
Flanking Amino Acid:
PWLDPHMDHAAQESWTDPSV
Intron Amino Acid Position:
1029

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
58.8
40.5
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
76.1
0.59
1
72.3
37.9
Minor 5ss
30.9
-2.2
3.3
41.7
45
Minor BPS
71.6
0.67
1.2
76.56
33.6

Associated Gene:

Gene:
SEC31B
Ensembl Gene ID:
ENSAPLG00000015227
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042973
3295669 - 3320638
24970