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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3301879_3302543_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3301879 - 3302543
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
CCTACCTTGATT
Flanking Amino Acid:
PAASLPPPPTGFFPWLDPHM
Intron Amino Acid Position:
1016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.6
93.5
20.3
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
80.5
0.69
0.9
76.8
36.3
Minor 5ss
38.4
-1.3
2.8
52.3
44.3
Minor BPS
67.6
0.63
1.3
75.42
41.9

Associated Gene:

Gene:
SEC31B
Ensembl Gene ID:
ENSAPLG00000015227
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042973
3295669 - 3320638
24970