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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3308157_3308570_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3308157 - 3308570
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACTAT
5'SS Class:
major
3'SS Sequence:
CTCACCTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GCTTTCTCACCT
Flanking Amino Acid:
MSALEIPVTEDTDGLISQAL
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
70
36.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
71.6
0.49
0.8
65.7
30.1
Minor 5ss
53.4
0.12
2.6
72.7
44.5
Minor BPS
53.9
0.2
1.9
72.31
44.6

Associated Gene:

Gene:
SEC31B
Ensembl Gene ID:
ENSAPLG00000015227
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042973
3295669 - 3320638
24970
ENSAPLT00000015921
3294451 - 3320638
26188