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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3309700_3310306_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3309700 - 3310306
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTACTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TGTCTCTTACTT
Flanking Amino Acid:
GYNKEDLQKKIASCLSNGIP
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
82.5
0.73
0.7
80.9
31
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
62
0.45
1.6
77.64
39

Associated Gene:

Gene:
SEC31B
Ensembl Gene ID:
ENSAPLG00000015227
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042973
3295669 - 3320638
24970
ENSAPLT00000015921
3294451 - 3320638
26188