About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33099268_33100163_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33099268 - 33100163
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTCCTTTCATT
Flanking Amino Acid:
LNAIVIRETKDYDAWKVCLR
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83
0.74
0.8
77.3
29.8
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
66.2
0.59
1.7
84.98
35.9

Associated Gene:

Gene:
OAT
Ensembl Gene ID:
ENSAPLG00000015424
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016102
33099107 - 33110504
11398