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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33100309_33101356_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33100309 - 33101356
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGTT
5'SS Class:
major
3'SS Sequence:
AACCTTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ACCTTCTAACCT
Flanking Amino Acid:
ACRVAIAALEVIEEEGLAKN
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
79.1
34.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
69.2
0.43
0.8
62.9
33.4
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
48.5
-0
1.9
64.83
46.2

Associated Gene:

Gene:
OAT
Ensembl Gene ID:
ENSAPLG00000015424
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016102
33099107 - 33110504
11398