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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33102469_33103551_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33102469 - 33103551
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGGAAT
5'SS Class:
major
3'SS Sequence:
TATCTCTATAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTTTTATCT
Flanking Amino Acid:
GVRDLCTKHNVLFIADEIQT
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
78.6
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.4
0.39
1.1
68
36.7
Minor 5ss
35.3
-1.7
3.3
47.8
41.5
Minor BPS
67.7
0.63
1.6
82.72
39.3

Associated Gene:

Gene:
OAT
Ensembl Gene ID:
ENSAPLG00000015424
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016102
33099107 - 33110504
11398