Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33103675_33105203_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33103675 - 33105203

Intron Length:

1529

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATTTGGA

5'SS Class:

major

3'SS Sequence:

ATCATATTTACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATCAT

U12 Branch Point Sequence:

TCATATTTACAG

Flanking Amino Acid:

IPYNDLPALERALQDPNVAA

Intron Amino Acid Position:

217

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

66.9

38.5

Major BPS

66.8

0.42

1.1

37.7

Major PPT

76.6

0.6

0.9

69.3

40.2

Minor 5ss

38.2

-1.3

3.1

46.2

Minor BPS

45.7

-0.4

1.9

50.07

43.8

Associated Gene:

Gene:

OAT

Ensembl Gene ID:

ENSAPLG00000015424

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016102

33099107 - 33110504

11398