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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33107492_33107987_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33107492 - 33107987
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACCATACTT
Flanking Amino Acid:
PLPVALEKGKGVYVWDVEGR
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
87.5
0.84
0.7
81.2
36.5
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
57.7
0.32
1.9
81.74
39.8

Associated Gene:

Gene:
OAT
Ensembl Gene ID:
ENSAPLG00000015424
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016102
33099107 - 33110504
11398