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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33108215_33110394_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
33108215 - 33110394
Intron Length:
2180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
TTTTCCTTTTTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
OAT
Ensembl Gene ID:
ENSAPLG00000015424
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016102
33099107 - 33110504
11398