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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33124898_33134861_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33124898 - 33134861
Intron Length:
9964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCGGG
5'SS Class:
major
3'SS Sequence:
TTTTACACGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTGCTTTTACA
Flanking Amino Acid:
PIAGSAEAVRKIKASGLKLR
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
60.8
44.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
71.4
0.48
1
66.8
39.1
Minor 5ss
37.4
-1.4
3.4
46.8
43.2
Minor BPS
60.9
0.34
1.7
71.79
40.2

Associated Gene:

Gene:
LHPP
Ensembl Gene ID:
ENSAPLG00000015176
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015825
33120777 - 33186676
65900