Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33135050_33135346_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33135050 - 33135346

Intron Length:

297

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGGGACAG

5'SS Class:

major

3'SS Sequence:

TTTTTTCCTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

GGATTTGTAATG

Flanking Amino Acid:

GLRPHLLVHDDLVPEFAEID

Intron Amino Acid Position:

107

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.2

0.36

1.1

49.9

42.7

Major BPS

84.4

0.85

1.1

34.5

Major PPT

90.2

0.9

0.6

89.9

18.2

Minor 5ss

-2.9

3.1

30.1

42.9

Minor BPS

46.1

-0.4

48.78

39.4

Associated Gene:

Gene:

LHPP

Ensembl Gene ID:

ENSAPLG00000015176

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015825

33120777 - 33186676

65900