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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33139122_33146338_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33139122 - 33146338
Intron Length:
7217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTG
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTGTATTT
Flanking Amino Acid:
LAEMGVPPQEAIMIGDDIVS
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
72.3
39.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.2
0.52
1
68.9
41.4
Minor 5ss
40.4
-1.1
3.3
55.5
48.6
Minor BPS
56.4
0.28
2.2
83.14
39

Associated Gene:

Gene:
LHPP
Ensembl Gene ID:
ENSAPLG00000015176
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015825
33120777 - 33186676
65900