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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3315798_3316048_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3315798 - 3316048
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
CTATCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TCTTTCCTATCT
Flanking Amino Acid:
SPLSQLEGHARGVLSVSWCQ
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
72.6
33
Major BPS
66.7
0.41
1
57.8
39
Major PPT
75.2
0.57
0.9
73.3
36.9
Minor 5ss
32.6
-2
3.2
41.8
45.1
Minor BPS
57.9
0.33
2
80
42.1

Associated Gene:

Gene:
SEC31B
Ensembl Gene ID:
ENSAPLG00000015227
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042973
3295669 - 3320638
24970
ENSAPLT00000015921
3294451 - 3320638
26188