About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_3316834_3317489_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3316834 - 3317489
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
CCTATCTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
CCTTTCCTATCT
Flanking Amino Acid:
VPMTPGAKSQPHEDISVVSW
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
72.4
0.5
1
68.5
37.1
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
51
0.11
2
71.67
45.4

Associated Gene:

Gene:
SEC31B
Ensembl Gene ID:
ENSAPLG00000015227
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042973
3295669 - 3320638
24970
ENSAPLT00000015921
3294451 - 3320638
26188