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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33208753_33210839_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33208753 - 33210839
Intron Length:
2087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGTGAA
U12 Branch Point Sequence:
GAGACGTGAACA
Flanking Amino Acid:
ADSVTCRTELHTPKMSQGPT
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
50.7
0.02
1.2
43
39.5
Major PPT
80
0.67
1
76.9
42.1
Minor 5ss
43.9
-0.7
3.2
62.5
43.1
Minor BPS
45.8
-0.3
2.2
55.39
42.8

Associated Gene:

Gene:
FAM53B
Ensembl Gene ID:
ENSAPLG00000015172
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015808
33190990 - 33216545
25556