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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33229228_33229702_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33229228 - 33229702
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATCAC
5'SS Class:
major
3'SS Sequence:
TTCTTCCTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TTCTTCCTAACA
Flanking Amino Acid:
FQDTGDAGEIWFGEESMVRV
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
67.4
37.9
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
81.2
0.7
0.8
77.5
29.9
Minor 5ss
34
-1.8
3
40.9
39.8
Minor BPS
69.1
0.6
1.7
79.54
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015137
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015772
33224830 - 33230199
5370