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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33232368_33235220_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33232368 - 33235220
Intron Length:
2853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACACAC
U12 Branch Point Sequence:
AGCAGCTGGACA
Flanking Amino Acid:
ISNTEFLQVIEIHNHEPCSK
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.5
39.2
Major BPS
46.9
-0.1
1.1
52.6
34.2
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
36.6
-1.5
2.7
46.7
41.7
Minor BPS
44.2
-0.4
1.9
50.98
40.1

Associated Gene:

Gene:
ABRAXAS2
Ensembl Gene ID:
ENSAPLG00000014971
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015622
33231663 - 33247528
15866