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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33235258_33237768_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33235258 - 33237768
Intron Length:
2511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGGTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTACAT
U12 Branch Point Sequence:
TGTGCCTACATT
Flanking Amino Acid:
HNHEPCSKLFSFYDYAGKVN
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
57.8
0.2
1.1
66.6
38.6
Major PPT
73.4
0.53
1.1
71.5
43.2
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
48.8
-0
2.2
71.98
45.4

Associated Gene:

Gene:
ABRAXAS2
Ensembl Gene ID:
ENSAPLG00000014971
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015622
33231663 - 33247528
15866