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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33237836_33240270_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33237836 - 33240270
Intron Length:
2435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCGATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTCTGATGT
Flanking Amino Acid:
LDRILKDRRKNVIGWYRFRR
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
69.6
0.44
0.9
62.3
38
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
54.7
0.23
2
80.23
41.8

Associated Gene:

Gene:
ABRAXAS2
Ensembl Gene ID:
ENSAPLG00000014971
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015622
33231663 - 33247528
15866