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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_33240462_33241011_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33240462 - 33241011
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
CTTTCTATATTT
Flanking Amino Acid:
LEYVLFRPNRRYNQRVSLTI
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
87
0.83
0.7
81.2
30.2
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
54.5
0.22
1.9
76.24
41.2

Associated Gene:

Gene:
ABRAXAS2
Ensembl Gene ID:
ENSAPLG00000014971
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015622
33231663 - 33247528
15866